Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SEM55820.1Uncharacterized conserved protein YcbK, DUF882 family. (186 aa)    
Predicted Functional Partners:
SEM55791.1
Glyoxylase, beta-lactamase superfamily II.
  
    0.927
SEM55849.1
L,D-transpeptidase catalytic domain.
 
     0.887
SEM34968.1
Penicillin-insensitive murein endopeptidase; Murein endopeptidase that cleaves the D-alanyl-meso-2,6- diamino-pimelyl amide bond that connects peptidoglycan strands. Likely plays a role in the removal of murein from the sacculus.
  
     0.748
SEM55740.1
phospholipid/cholesterol/gamma-HCH transport system permease protein.
       0.599
SEM55766.1
phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein.
       0.599
SEM55710.1
phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein.
  
    0.571
SEM55685.1
Phospholipid transport system substrate-binding protein.
       0.476
SEM55662.1
Phospholipid transport system transporter-binding protein.
       0.476
gloB
Hydroxyacylglutathione hydrolase; Thiolesterase that catalyzes the hydrolysis of S-D-lactoyl- glutathione to form glutathione and D-lactic acid.
  
    0.454
SEM55634.1
Acid stress-induced BolA-like protein IbaG/YrbA, predicted regulator of iron metabolism; Belongs to the BolA/IbaG family.
       0.435
Your Current Organism:
Pasteurella skyensis
NCBI taxonomy Id: 97481
Other names: DSM 24204, NCIMB 13593, NCTC 13204, P. skyensis, Pasteurella skyensis Birkbeck et al. 2002, strain 95A1
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