Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
SEM55576.1Dipeptide transport system substrate-binding protein. (530 aa)    
Predicted Functional Partners:
SEM55547.1
Dipeptide transport system permease protein.
 0.995
SEM55523.1
Dipeptide transport system permease protein.
 0.993
SEM01988.1
Dipeptide transport system substrate-binding protein.
  
  
 
0.904
SEM44924.1
Peptide/nickel transport system substrate-binding protein.
 
 
 0.816
SEL92056.1
Cationic peptide transport system permease protein.
 
  
 0.791
SEL92033.1
Cationic peptide transport system permease protein.
 
   
 0.779
SEL92078.1
Cationic peptide transport system ATP-binding protein; Belongs to the ABC transporter superfamily.
 
  
 0.688
SEM55740.1
phospholipid/cholesterol/gamma-HCH transport system permease protein.
    
  0.511
SEL92001.1
Cationic peptide transport system substrate-binding protein.
  
  
 
0.482
SEM01627.1
Cationic peptide transport system ATP-binding protein.
 
   
 0.455
Your Current Organism:
Pasteurella skyensis
NCBI taxonomy Id: 97481
Other names: DSM 24204, NCIMB 13593, NCTC 13204, P. skyensis, Pasteurella skyensis Birkbeck et al. 2002, strain 95A1
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