Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SEM61192.1Hypothetical protein. (113 aa)    
Predicted Functional Partners:
SEM37633.1
Hypothetical protein.
 
 
 
 0.749
efp
Elongation factor P; Involved in peptide bond synthesis. Alleviates ribosome stalling that occurs when 3 or more consecutive Pro residues or the sequence PPG is present in a protein, possibly by augmenting the peptidyl transferase activity of the ribosome. Modification of Lys-34 is required for alleviation; Belongs to the elongation factor P family.
       0.581
SEM61212.1
Hypothetical protein.
       0.556
SEM65565.1
Protein of unknown function.
  
 
   0.541
SEM12015.1
Peroxiredoxin, Ohr subfamily.
   
    0.514
SEL90164.1
Hypothetical protein.
    
   0.473
SEM69017.1
Head domain of trimeric autotransporter adhesin.
    
   0.473
SEM61238.1
Uncharacterized protein.
       0.464
SEM12062.1
Putative intracellular protease/amidase.
   
    0.456
SEM10490.1
Ecotin.
  
     0.453
Your Current Organism:
Pasteurella skyensis
NCBI taxonomy Id: 97481
Other names: DSM 24204, NCIMB 13593, NCTC 13204, P. skyensis, Pasteurella skyensis Birkbeck et al. 2002, strain 95A1
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