Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SEM61017.1Coiled stalk of trimeric autotransporter adhesin. (1011 aa)    
Predicted Functional Partners:
SEM67822.1
Head domain of trimeric autotransporter adhesin.
 
   
 0.773
SEM42099.1
Head domain of trimeric autotransporter adhesin.
 
   
 0.772
SEM69017.1
Head domain of trimeric autotransporter adhesin.
  
  
 0.767
SEM13487.1
Head domain of trimeric autotransporter adhesin.
  
     0.764
SEM69389.1
Hypothetical protein.
  
     0.715
SEM27089.1
Coiled stalk of trimeric autotransporter adhesin.
  
     0.709
SEM67947.1
Coiled stalk of trimeric autotransporter adhesin.
  
     0.689
SEM50670.1
Protein of unknown function.
  
     0.679
SEM42081.1
Hypothetical protein.
  
     0.674
SEM64321.1
Phage-related protein, tail component.
  
 
 
 0.584
Your Current Organism:
Pasteurella skyensis
NCBI taxonomy Id: 97481
Other names: DSM 24204, NCIMB 13593, NCTC 13204, P. skyensis, Pasteurella skyensis Birkbeck et al. 2002, strain 95A1
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