STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEM63630.1Phage tail tape measure protein, lambda family. (1087 aa)    
Predicted Functional Partners:
SEM63690.1
Proteasome lid subunit RPN8/RPN11, contains Jab1/MPN metalloenzyme (JAMM) motif.
 
  
 0.941
SEM63669.1
Lambda-like phage minor tail protein L.
 
    0.905
SEM63709.1
Phage-related protein, tail component.
 
    0.888
SEM63589.1
Phage-related protein.
 
    0.847
SEM68119.1
Phage putative head morphogenesis protein, SPP1 gp7 family.
 
     0.748
SEM68255.1
Phage putative head morphogenesis protein, SPP1 gp7 family.
 
     0.741
SEM63610.1
Phage regulatory protein, rha family.
       0.620
SEM64321.1
Phage-related protein, tail component.
 
     0.564
SEM68088.1
Protein of unknown function.
  
     0.543
SEM68234.1
Protein of unknown function.
  
     0.515
Your Current Organism:
Pasteurella skyensis
NCBI taxonomy Id: 97481
Other names: DSM 24204, NCIMB 13593, NCTC 13204, P. skyensis, Pasteurella skyensis Birkbeck et al. 2002, strain 95A1
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