Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SEM65636.1Tape measure domain-containing protein. (717 aa)    
Predicted Functional Partners:
SEM63589.1
Phage-related protein.
  
 
 0.779
SEM63669.1
Lambda-like phage minor tail protein L.
  
 
 0.753
SEM63709.1
Phage-related protein, tail component.
 
   0.712
SEM68119.1
Phage putative head morphogenesis protein, SPP1 gp7 family.
 
     0.661
SEM63690.1
Proteasome lid subunit RPN8/RPN11, contains Jab1/MPN metalloenzyme (JAMM) motif.
  
 
 0.652
SEM68255.1
Phage putative head morphogenesis protein, SPP1 gp7 family.
 
     0.613
SEM65408.1
Uncharacterized conserved protein YjdB, contains Ig-like domain.
  
   0.478
SEM65475.1
Phage protein, HK97 gp10 family.
  
    0.467
SEM65590.1
Protein of unknown function.
       0.464
SEM65613.1
Hypothetical protein.
       0.444
Your Current Organism:
Pasteurella skyensis
NCBI taxonomy Id: 97481
Other names: DSM 24204, NCIMB 13593, NCTC 13204, P. skyensis, Pasteurella skyensis Birkbeck et al. 2002, strain 95A1
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