STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEM65503.1Hypothetical protein. (116 aa)    
Predicted Functional Partners:
SEM65451.1
Hypothetical protein.
       0.773
SEM65475.1
Phage protein, HK97 gp10 family.
       0.773
SEM65536.1
Hypothetical protein.
       0.773
SEM65565.1
Protein of unknown function.
       0.773
SEM65613.1
Hypothetical protein.
       0.757
SEM65590.1
Protein of unknown function.
       0.757
SEM65425.1
HeH/LEM domain-containing protein.
       0.536
SEM65408.1
Uncharacterized conserved protein YjdB, contains Ig-like domain.
       0.529
SEM65384.1
Hypothetical protein.
       0.504
SEM65636.1
Tape measure domain-containing protein.
       0.436
Your Current Organism:
Pasteurella skyensis
NCBI taxonomy Id: 97481
Other names: DSM 24204, NCIMB 13593, NCTC 13204, P. skyensis, Pasteurella skyensis Birkbeck et al. 2002, strain 95A1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.