Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SEM65565.1Protein of unknown function. (438 aa)    
Predicted Functional Partners:
SEM65475.1
Phage protein, HK97 gp10 family.
 
     0.862
SEM37633.1
Hypothetical protein.
 
 
   0.818
SEM37724.1
Hypothetical protein.
 
     0.786
SEM65536.1
Hypothetical protein.
       0.784
SEM37701.1
Hypothetical protein.
 
     0.781
SEM65451.1
Hypothetical protein.
       0.773
SEM65503.1
Hypothetical protein.
       0.773
SEM65590.1
Protein of unknown function.
       0.768
SEM65613.1
Hypothetical protein.
       0.760
SEM64321.1
Phage-related protein, tail component.
 
 
 
 0.593
Your Current Organism:
Pasteurella skyensis
NCBI taxonomy Id: 97481
Other names: DSM 24204, NCIMB 13593, NCTC 13204, P. skyensis, Pasteurella skyensis Birkbeck et al. 2002, strain 95A1
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