STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEM66403.1CxxC motif-containing protein, DUF1111 family. (472 aa)    
Predicted Functional Partners:
SEM66425.1
Putative iron-regulated protein.
 
    0.950
SEM66366.1
Imelysin.
  
  
 0.883
SEM66310.1
Cytochrome c peroxidase.
 
     0.807
SEM66345.1
Sterol desaturase/sphingolipid hydroxylase, fatty acid hydroxylase superfamily.
 
     0.775
SEM18088.1
iron(III) transport system substrate-binding protein.
 
    0.605
SEM17851.1
iron(III) transport system permease protein.
  
    0.465
Your Current Organism:
Pasteurella skyensis
NCBI taxonomy Id: 97481
Other names: DSM 24204, NCIMB 13593, NCTC 13204, P. skyensis, Pasteurella skyensis Birkbeck et al. 2002, strain 95A1
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.