Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SEM66425.1Putative iron-regulated protein. (454 aa)    
Predicted Functional Partners:
SEM66403.1
CxxC motif-containing protein, DUF1111 family.
 
    0.957
SEM18088.1
iron(III) transport system substrate-binding protein.
  
    0.825
SEM66366.1
Imelysin.
  
    0.693
SEM66310.1
Cytochrome c peroxidase.
 
     0.672
SEM66345.1
Sterol desaturase/sphingolipid hydroxylase, fatty acid hydroxylase superfamily.
 
     0.571
SEM66453.1
Protein of unknown function.
       0.524
SEM38899.1
Iron complex transport system substrate-binding protein.
  
    0.471
SEM17851.1
iron(III) transport system permease protein.
  
    0.410
SEM66482.1
TatD DNase family protein.
       0.410
Your Current Organism:
Pasteurella skyensis
NCBI taxonomy Id: 97481
Other names: DSM 24204, NCIMB 13593, NCTC 13204, P. skyensis, Pasteurella skyensis Birkbeck et al. 2002, strain 95A1
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