Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SEM67646.1Flp/Fap pilin component. (82 aa)    
Predicted Functional Partners:
SEM28704.1
Pilus assembly protein Flp/PilA.
     
 
0.900
SEM28762.1
Pilus assembly protein CpaB.
  
  
 0.639
SEM67616.1
ATP-binding cassette, subfamily B, multidrug efflux pump.
       0.588
SEM28882.1
Pilus assembly protein CpaE.
  
  
 0.548
SEM28731.1
Prepilin peptidase CpaA.
  
  
 0.452
SEM28806.1
Pilus assembly protein CpaC; Belongs to the bacterial secretin family.
  
  
 0.413
SEM67581.1
Paraquat-inducible protein B.
       0.413
Your Current Organism:
Pasteurella skyensis
NCBI taxonomy Id: 97481
Other names: DSM 24204, NCIMB 13593, NCTC 13204, P. skyensis, Pasteurella skyensis Birkbeck et al. 2002, strain 95A1
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