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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEM67947.1Coiled stalk of trimeric autotransporter adhesin. (1204 aa)    
Predicted Functional Partners:
SEM61017.1
Coiled stalk of trimeric autotransporter adhesin.
  
     0.689
SEM67822.1
Head domain of trimeric autotransporter adhesin.
  
     0.600
SEM24857.1
Head domain of trimeric autotransporter adhesin.
  
     0.559
SEM10281.1
Hypothetical protein.
  
     0.532
SEM69017.1
Head domain of trimeric autotransporter adhesin.
  
     0.531
SEM13395.1
Autotransporter adhesin.
  
     0.527
SEM13511.1
Autotransporter adhesin.
  
     0.509
SEM13348.1
Head domain of trimeric autotransporter adhesin.
  
     0.486
Your Current Organism:
Pasteurella skyensis
NCBI taxonomy Id: 97481
Other names: DSM 24204, NCIMB 13593, NCTC 13204, P. skyensis, Pasteurella skyensis Birkbeck et al. 2002, strain 95A1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.