Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SEM69017.1Head domain of trimeric autotransporter adhesin. (560 aa)    
Predicted Functional Partners:
SEM61017.1
Coiled stalk of trimeric autotransporter adhesin.
  
  
 0.767
SEM27056.1
Coiled stalk of trimeric autotransporter adhesin.
  
     0.751
SEM13511.1
Autotransporter adhesin.
  
     0.748
SEM66697.1
Coiled stalk of trimeric autotransporter adhesin.
  
     0.714
SEM42081.1
Hypothetical protein.
  
     0.656
SEM07222.1
Iron complex outermembrane recepter protein.
  
 
 
 0.637
SEM69389.1
Hypothetical protein.
  
     0.636
SEM27089.1
Coiled stalk of trimeric autotransporter adhesin.
  
     0.595
SEM64321.1
Phage-related protein, tail component.
 
 
 
 0.552
SEM20151.1
Two-component system, OmpR family, aerobic respiration control sensor histidine kinase ArcB.
   
 
 0.538
Your Current Organism:
Pasteurella skyensis
NCBI taxonomy Id: 97481
Other names: DSM 24204, NCIMB 13593, NCTC 13204, P. skyensis, Pasteurella skyensis Birkbeck et al. 2002, strain 95A1
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