RNF215 protein (Delphinapterus leucas) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

RNF215

RING finger protein 215 isoform X1. (377 aa)

Predicted Functional Partners:

UBOX5

0.688

ASB8

0.609

RPS27A

0.556

RSPO1

0.541

SYVN1

0.522

FBXO7

0.521

UBR1

0.517

MARCH2

0.516

RFFL

0.514

UBR4

0.506

Your Current Organism:

Delphinapterus leucas

NCBI taxonomy Id: 9749
Other names: D. leucas, beluga, beluga whale, white whale

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ASB8	RNF215	A0A2Y9N1H7	A0A2Y9LD42	Ankyrin repeat and SOCS box protein 8 isoform X1.	RING finger protein 215 isoform X1.	0.609
ASB8	UBOX5	A0A2Y9N1H7	A0A2Y9PNY1	Ankyrin repeat and SOCS box protein 8 isoform X1.	RING finger protein 37 isoform X1.	0.598
FBXO7	RNF215	A0A2Y9QDP1	A0A2Y9LD42	F-box only protein 7 isoform X1.	RING finger protein 215 isoform X1.	0.521
FBXO7	UBOX5	A0A2Y9QDP1	A0A2Y9PNY1	F-box only protein 7 isoform X1.	RING finger protein 37 isoform X1.	0.500
MARCH2	RNF215	A0A2Y9M734	A0A2Y9LD42	E3 ubiquitin-protein ligase MARCH2.	RING finger protein 215 isoform X1.	0.516
MARCH2	UBOX5	A0A2Y9M734	A0A2Y9PNY1	E3 ubiquitin-protein ligase MARCH2.	RING finger protein 37 isoform X1.	0.514
RFFL	RNF215	A0A2Y9MM95	A0A2Y9LD42	E3 ubiquitin-protein ligase rififylin isoform X2.	RING finger protein 215 isoform X1.	0.514
RFFL	UBOX5	A0A2Y9MM95	A0A2Y9PNY1	E3 ubiquitin-protein ligase rififylin isoform X2.	RING finger protein 37 isoform X1.	0.514
RNF215	ASB8	A0A2Y9LD42	A0A2Y9N1H7	RING finger protein 215 isoform X1.	Ankyrin repeat and SOCS box protein 8 isoform X1.	0.609
RNF215	FBXO7	A0A2Y9LD42	A0A2Y9QDP1	RING finger protein 215 isoform X1.	F-box only protein 7 isoform X1.	0.521
RNF215	MARCH2	A0A2Y9LD42	A0A2Y9M734	RING finger protein 215 isoform X1.	E3 ubiquitin-protein ligase MARCH2.	0.516
RNF215	RFFL	A0A2Y9LD42	A0A2Y9MM95	RING finger protein 215 isoform X1.	E3 ubiquitin-protein ligase rififylin isoform X2.	0.514
RNF215	RPS27A	A0A2Y9LD42	A0A2Y9Q1L7	RING finger protein 215 isoform X1.	ubiquitin-40S ribosomal protein S27a.	0.556
RNF215	RSPO1	A0A2Y9LD42	A0A2Y9N8T9	RING finger protein 215 isoform X1.	R-spondin-1.	0.541
RNF215	SYVN1	A0A2Y9LD42	A0A2Y9PNA4	RING finger protein 215 isoform X1.	E3 ubiquitin-protein ligase synoviolin.	0.522
RNF215	UBOX5	A0A2Y9LD42	A0A2Y9PNY1	RING finger protein 215 isoform X1.	RING finger protein 37 isoform X1.	0.688
RNF215	UBR1	A0A2Y9LD42	A0A2Y9PAF3	RING finger protein 215 isoform X1.	E3 ubiquitin-protein ligase; Ubiquitin ligase protein which is a component of the N-end rule pathway. Recognizes and binds to proteins bearing specific N- terminal residues that are destabilizing according to the N-end rule, leading to their ubiquitination and subsequent degradation.	0.517
RNF215	UBR4	A0A2Y9LD42	A0A2Y9LGA4	RING finger protein 215 isoform X1.	E3 ubiquitin-protein ligase UBR4 isoform X1.	0.506
RPS27A	RNF215	A0A2Y9Q1L7	A0A2Y9LD42	ubiquitin-40S ribosomal protein S27a.	RING finger protein 215 isoform X1.	0.556
RPS27A	RSPO1	A0A2Y9Q1L7	A0A2Y9N8T9	ubiquitin-40S ribosomal protein S27a.	R-spondin-1.	0.545