SETD4 protein (Delphinapterus leucas) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SETD4

SET domain-containing protein 4. (440 aa)

Predicted Functional Partners:

KIAA1958

0.767

FTCD

0.693

PRMT8

0.626

ESCO1

0.619

B4GALT6

0.616

WRB

0.614

SLC37A3

0.614

ESCO2

0.609

ST6GAL2

0.603

SETD1A

0.563

Your Current Organism:

Delphinapterus leucas

NCBI taxonomy Id: 9749
Other names: D. leucas, beluga, beluga whale, white whale

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
B4GALT6	FTCD	A0A2Y9P671	A0A2Y9Q4P5	Beta-1,4-galactosyltransferase 6 isoform X1.	Formimidoyltransferase-cyclodeaminase isoform X1.	0.612
B4GALT6	KIAA1958	A0A2Y9P671	A0A2Y9NL13	Beta-1,4-galactosyltransferase 6 isoform X1.	Uncharacterized protein KIAA1958 homolog isoform X3.	0.748
B4GALT6	SETD4	A0A2Y9P671	A0A2Y9LIC4	Beta-1,4-galactosyltransferase 6 isoform X1.	SET domain-containing protein 4.	0.616
ESCO1	SETD4	A0A2Y9P8X6	A0A2Y9LIC4	N-acetyltransferase ESCO1.	SET domain-containing protein 4.	0.619
ESCO2	SETD4	A0A2Y9Q523	A0A2Y9LIC4	N-acetyltransferase ESCO2.	SET domain-containing protein 4.	0.609
FTCD	B4GALT6	A0A2Y9Q4P5	A0A2Y9P671	Formimidoyltransferase-cyclodeaminase isoform X1.	Beta-1,4-galactosyltransferase 6 isoform X1.	0.612
FTCD	KIAA1958	A0A2Y9Q4P5	A0A2Y9NL13	Formimidoyltransferase-cyclodeaminase isoform X1.	Uncharacterized protein KIAA1958 homolog isoform X3.	0.767
FTCD	SETD4	A0A2Y9Q4P5	A0A2Y9LIC4	Formimidoyltransferase-cyclodeaminase isoform X1.	SET domain-containing protein 4.	0.693
KIAA1958	B4GALT6	A0A2Y9NL13	A0A2Y9P671	Uncharacterized protein KIAA1958 homolog isoform X3.	Beta-1,4-galactosyltransferase 6 isoform X1.	0.748
KIAA1958	FTCD	A0A2Y9NL13	A0A2Y9Q4P5	Uncharacterized protein KIAA1958 homolog isoform X3.	Formimidoyltransferase-cyclodeaminase isoform X1.	0.767
KIAA1958	SETD4	A0A2Y9NL13	A0A2Y9LIC4	Uncharacterized protein KIAA1958 homolog isoform X3.	SET domain-containing protein 4.	0.767
PRMT8	SETD1A	A0A2Y9NDL8	A0A2Y9PKY4	Protein arginine N-methyltransferase 8; Belongs to the class I-like SAM-binding methyltransferase superfamily. Protein arginine N-methyltransferase family.	Histone-lysine N-methyltransferase SETD1A.	0.460
PRMT8	SETD4	A0A2Y9NDL8	A0A2Y9LIC4	Protein arginine N-methyltransferase 8; Belongs to the class I-like SAM-binding methyltransferase superfamily. Protein arginine N-methyltransferase family.	SET domain-containing protein 4.	0.626
SETD1A	PRMT8	A0A2Y9PKY4	A0A2Y9NDL8	Histone-lysine N-methyltransferase SETD1A.	Protein arginine N-methyltransferase 8; Belongs to the class I-like SAM-binding methyltransferase superfamily. Protein arginine N-methyltransferase family.	0.460
SETD1A	SETD4	A0A2Y9PKY4	A0A2Y9LIC4	Histone-lysine N-methyltransferase SETD1A.	SET domain-containing protein 4.	0.563
SETD4	B4GALT6	A0A2Y9LIC4	A0A2Y9P671	SET domain-containing protein 4.	Beta-1,4-galactosyltransferase 6 isoform X1.	0.616
SETD4	ESCO1	A0A2Y9LIC4	A0A2Y9P8X6	SET domain-containing protein 4.	N-acetyltransferase ESCO1.	0.619
SETD4	ESCO2	A0A2Y9LIC4	A0A2Y9Q523	SET domain-containing protein 4.	N-acetyltransferase ESCO2.	0.609
SETD4	FTCD	A0A2Y9LIC4	A0A2Y9Q4P5	SET domain-containing protein 4.	Formimidoyltransferase-cyclodeaminase isoform X1.	0.693
SETD4	KIAA1958	A0A2Y9LIC4	A0A2Y9NL13	SET domain-containing protein 4.	Uncharacterized protein KIAA1958 homolog isoform X3.	0.767