KCNF1 protein (Delphinapterus leucas) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

KCNF1

Potassium voltage-gated channel subfamily F member 1; Belongs to the potassium channel family. (494 aa)

Predicted Functional Partners:

NOL10

0.862

LOC111177320

0.834

FAU

0.834

HPCAL1

0.808

PQLC3

0.774

ATP6V1C2

0.729

E2F6

0.726

RPL23A

0.687

RPL31

0.686

RPL29

0.685

Your Current Organism:

Delphinapterus leucas

NCBI taxonomy Id: 9749
Other names: D. leucas, beluga, beluga whale, white whale

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ATP6V1C2	HPCAL1	A0A2Y9LX96	A0A2Y9LME2	V-type proton ATPase subunit C; Subunit of the peripheral V1 complex of vacuolar ATPase. Subunit C is necessary for the assembly of the catalytic sector of the enzyme and is likely to have a specific function in its catalytic activity. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.	Hippocalcin-like protein 1.	0.617
ATP6V1C2	KCNF1	A0A2Y9LX96	A0A2Y9LMC3	V-type proton ATPase subunit C; Subunit of the peripheral V1 complex of vacuolar ATPase. Subunit C is necessary for the assembly of the catalytic sector of the enzyme and is likely to have a specific function in its catalytic activity. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.	Potassium voltage-gated channel subfamily F member 1; Belongs to the potassium channel family.	0.729
ATP6V1C2	NOL10	A0A2Y9LX96	A0A2Y9LX87	V-type proton ATPase subunit C; Subunit of the peripheral V1 complex of vacuolar ATPase. Subunit C is necessary for the assembly of the catalytic sector of the enzyme and is likely to have a specific function in its catalytic activity. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.	Nucleolar protein 10.	0.611
ATP6V1C2	PQLC3	A0A2Y9LX96	A0A2Y9LJP5	V-type proton ATPase subunit C; Subunit of the peripheral V1 complex of vacuolar ATPase. Subunit C is necessary for the assembly of the catalytic sector of the enzyme and is likely to have a specific function in its catalytic activity. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.	PQ-loop repeat-containing protein 3.	0.703
E2F6	KCNF1	A0A2Y9LJL3	A0A2Y9LMC3	Transcription factor E2F6 isoform X1.	Potassium voltage-gated channel subfamily F member 1; Belongs to the potassium channel family.	0.726
E2F6	NOL10	A0A2Y9LJL3	A0A2Y9LX87	Transcription factor E2F6 isoform X1.	Nucleolar protein 10.	0.659
E2F6	PQLC3	A0A2Y9LJL3	A0A2Y9LJP5	Transcription factor E2F6 isoform X1.	PQ-loop repeat-containing protein 3.	0.639
FAU	KCNF1	A0A2Y9PV70	A0A2Y9LMC3	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	Potassium voltage-gated channel subfamily F member 1; Belongs to the potassium channel family.	0.834
FAU	LOC111177320	A0A2Y9PV70	A0A2Y9NU42	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	0.998
FAU	RPL23A	A0A2Y9PV70	A0A2Y9PXI6	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	60S ribosomal protein L23a; Belongs to the universal ribosomal protein uL23 family.	0.999
FAU	RPL29	A0A2Y9PV70	A0A2Y9N6I7	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	60S ribosomal protein L29; Belongs to the eukaryotic ribosomal protein eL29 family.	0.999
FAU	RPL31	A0A2Y9PV70	A0A2Y9QB64	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	60S ribosomal protein L31.	0.999
HPCAL1	ATP6V1C2	A0A2Y9LME2	A0A2Y9LX96	Hippocalcin-like protein 1.	V-type proton ATPase subunit C; Subunit of the peripheral V1 complex of vacuolar ATPase. Subunit C is necessary for the assembly of the catalytic sector of the enzyme and is likely to have a specific function in its catalytic activity. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.	0.617
HPCAL1	KCNF1	A0A2Y9LME2	A0A2Y9LMC3	Hippocalcin-like protein 1.	Potassium voltage-gated channel subfamily F member 1; Belongs to the potassium channel family.	0.808
HPCAL1	NOL10	A0A2Y9LME2	A0A2Y9LX87	Hippocalcin-like protein 1.	Nucleolar protein 10.	0.680
HPCAL1	PQLC3	A0A2Y9LME2	A0A2Y9LJP5	Hippocalcin-like protein 1.	PQ-loop repeat-containing protein 3.	0.756
KCNF1	ATP6V1C2	A0A2Y9LMC3	A0A2Y9LX96	Potassium voltage-gated channel subfamily F member 1; Belongs to the potassium channel family.	V-type proton ATPase subunit C; Subunit of the peripheral V1 complex of vacuolar ATPase. Subunit C is necessary for the assembly of the catalytic sector of the enzyme and is likely to have a specific function in its catalytic activity. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.	0.729
KCNF1	E2F6	A0A2Y9LMC3	A0A2Y9LJL3	Potassium voltage-gated channel subfamily F member 1; Belongs to the potassium channel family.	Transcription factor E2F6 isoform X1.	0.726
KCNF1	FAU	A0A2Y9LMC3	A0A2Y9PV70	Potassium voltage-gated channel subfamily F member 1; Belongs to the potassium channel family.	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	0.834
KCNF1	HPCAL1	A0A2Y9LMC3	A0A2Y9LME2	Potassium voltage-gated channel subfamily F member 1; Belongs to the potassium channel family.	Hippocalcin-like protein 1.	0.808