LOC111169286 protein (Delphinapterus leucas)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC111169286

Zinc finger protein 354B isoform X1. (613 aa)

Predicted Functional Partners:

MED6

0.678

GEMIN8

0.620

NMT2

0.609

BCAS2

0.609

LDB2

0.530

STX7

0.459

ALAS2

0.434

Your Current Organism:

Delphinapterus leucas

NCBI taxonomy Id: 9749
Other names: D. leucas, beluga, beluga whale, white whale

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ALAS2	LOC111169286	Q9XT75	A0A2Y9MDJ4	5-aminolevulinate synthase, erythroid-specific, mitochondrial; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family.	Zinc finger protein 354B isoform X1.	0.434
ALAS2	NMT2	Q9XT75	A0A2Y9NTH0	5-aminolevulinate synthase, erythroid-specific, mitochondrial; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family.	Glycylpeptide N-tetradecanoyltransferase; Adds a myristoyl group to the N-terminal glycine residue of certain cellular proteins; Belongs to the NMT family.	0.459
BCAS2	GEMIN8	A0A2Y9NXM6	A0A2Y9MHQ3	pre-mRNA-splicing factor SPF27.	Gem-associated protein 8.	0.508
BCAS2	LOC111169286	A0A2Y9NXM6	A0A2Y9MDJ4	pre-mRNA-splicing factor SPF27.	Zinc finger protein 354B isoform X1.	0.609
BCAS2	MED6	A0A2Y9NXM6	A0A2Y9MU78	pre-mRNA-splicing factor SPF27.	Mediator of RNA polymerase II transcription subunit 6; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.	0.546
BCAS2	NMT2	A0A2Y9NXM6	A0A2Y9NTH0	pre-mRNA-splicing factor SPF27.	Glycylpeptide N-tetradecanoyltransferase; Adds a myristoyl group to the N-terminal glycine residue of certain cellular proteins; Belongs to the NMT family.	0.438
GEMIN8	BCAS2	A0A2Y9MHQ3	A0A2Y9NXM6	Gem-associated protein 8.	pre-mRNA-splicing factor SPF27.	0.508
GEMIN8	LDB2	A0A2Y9MHQ3	A0A2Y9MZY0	Gem-associated protein 8.	LIM domain-binding protein 2 isoform X1.	0.438
GEMIN8	LOC111169286	A0A2Y9MHQ3	A0A2Y9MDJ4	Gem-associated protein 8.	Zinc finger protein 354B isoform X1.	0.620
GEMIN8	MED6	A0A2Y9MHQ3	A0A2Y9MU78	Gem-associated protein 8.	Mediator of RNA polymerase II transcription subunit 6; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.	0.616
GEMIN8	NMT2	A0A2Y9MHQ3	A0A2Y9NTH0	Gem-associated protein 8.	Glycylpeptide N-tetradecanoyltransferase; Adds a myristoyl group to the N-terminal glycine residue of certain cellular proteins; Belongs to the NMT family.	0.605
LDB2	GEMIN8	A0A2Y9MZY0	A0A2Y9MHQ3	LIM domain-binding protein 2 isoform X1.	Gem-associated protein 8.	0.438
LDB2	LOC111169286	A0A2Y9MZY0	A0A2Y9MDJ4	LIM domain-binding protein 2 isoform X1.	Zinc finger protein 354B isoform X1.	0.530
LDB2	MED6	A0A2Y9MZY0	A0A2Y9MU78	LIM domain-binding protein 2 isoform X1.	Mediator of RNA polymerase II transcription subunit 6; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.	0.478
LDB2	NMT2	A0A2Y9MZY0	A0A2Y9NTH0	LIM domain-binding protein 2 isoform X1.	Glycylpeptide N-tetradecanoyltransferase; Adds a myristoyl group to the N-terminal glycine residue of certain cellular proteins; Belongs to the NMT family.	0.615
LOC111169286	ALAS2	A0A2Y9MDJ4	Q9XT75	Zinc finger protein 354B isoform X1.	5-aminolevulinate synthase, erythroid-specific, mitochondrial; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family.	0.434
LOC111169286	BCAS2	A0A2Y9MDJ4	A0A2Y9NXM6	Zinc finger protein 354B isoform X1.	pre-mRNA-splicing factor SPF27.	0.609
LOC111169286	GEMIN8	A0A2Y9MDJ4	A0A2Y9MHQ3	Zinc finger protein 354B isoform X1.	Gem-associated protein 8.	0.620
LOC111169286	LDB2	A0A2Y9MDJ4	A0A2Y9MZY0	Zinc finger protein 354B isoform X1.	LIM domain-binding protein 2 isoform X1.	0.530
LOC111169286	MED6	A0A2Y9MDJ4	A0A2Y9MU78	Zinc finger protein 354B isoform X1.	Mediator of RNA polymerase II transcription subunit 6; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.	0.678