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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAB43Ras-related protein Rab-43. (171 aa)    
Predicted Functional Partners:
TRAPPC1
Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family.
    
 0.704
TBC1D20
TBC1 domain family member 20.
    
 0.694
TRAPPC5
Trafficking protein particle complex subunit 5; May play a role in vesicular transport from endoplasmic reticulum to Golgi.
    
 0.689
TRAPPC4
Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family.
    
 0.687
TRAPPC2
Trafficking protein particle complex subunit 2 isoform X1.
    
 0.675
TRAPPC8
Trafficking protein particle complex subunit 8 isoform X1.
    
 0.675
ISY1
pre-mRNA-splicing factor ISY1 homolog.
 
    
 0.635
USO1
General vesicular transport factor p115.
   
 0.629
RABGGTB
Geranylgeranyl transferase type-2 subunit beta; Catalyzes the transfer of a geranylgeranyl moiety from geranylgeranyl diphosphate to both cysteines of proteins with the C- terminal sequence -XXCC, -XCXC and -CCXX.
    
 0.609
TRAPPC3L
Trafficking protein particle complex subunit 3-like protein.
   
 0.607
Your Current Organism:
Delphinapterus leucas
NCBI taxonomy Id: 9749
Other names: D. leucas, beluga, beluga whale, white whale
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.