Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PDLIM2LOW QUALITY PROTEIN: PDZ and LIM domain protein 2. (572 aa)    
Predicted Functional Partners:
PDLIM4
PDZ and LIM domain protein 4 isoform X1.
     
0.928
PDLIM1
PDZ and LIM domain protein 1.
     
0.900
MKRN2
Probable E3 ubiquitin-protein ligase makorin-2.
    
 
 0.632
PDLIM5
PDZ and LIM domain protein 5 isoform X1.
     
0.578
LDB3
LIM domain-binding protein 3 isoform X5.
     
0.551
PDLIM7
PDZ and LIM domain protein 7 isoform X1.
     
0.551
PDLIM3
PDZ and LIM domain protein 3 isoform X2.
     
0.543
WTIP
Wilms tumor protein 1-interacting protein isoform X1.
   
 
 0.534
RAC3
Ras-related C3 botulinum toxin substrate 3 isoform X1.
   
 0.533
NCKAP1
Nck-associated protein 1 isoform X1.
   
 
 0.514
Your Current Organism:
Delphinapterus leucas
NCBI taxonomy Id: 9749
Other names: D. leucas, beluga, beluga whale, white whale
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