STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C5orf49Uncharacterized protein C5orf49 homolog. (147 aa)    
Predicted Functional Partners:
C13H9orf116
UPF0691 protein C9orf116 homolog.
    
 
 0.946
C20H4orf47
UPF0602 protein C4orf47 homolog isoform X1.
  
  
 0.820
IFT57
Intraflagellar transport protein 57 homolog.
      
 0.776
EFCAB1
EF-hand calcium-binding domain-containing protein 1 isoform X1.
    
 
 0.774
ARMC3
Armadillo repeat-containing protein 3 isoform X1.
   
  
 0.736
CFAP161
Cilia- and flagella-associated protein 161.
   
 
 0.629
ENSPCTP00005007700
annotation not available
    
 
 0.624
CCDC170
LOW QUALITY PROTEIN: coiled-coil domain-containing protein 170.
      
 0.617
LOC102975796
Coiled-coil domain-containing protein 170-like isoform X1.
      
 0.617
NME7
Nucleoside diphosphate kinase 7; Belongs to the NDK family.
   
 
 0.608
Your Current Organism:
Physeter catodon
NCBI taxonomy Id: 9755
Other names: P. catodon, Physeter macrocephalus, sperm whale
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.