STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MARCH6E3 ubiquitin-protein ligase MARCH6 isoform X2. (910 aa)    
Predicted Functional Partners:
CNOT2
CCR4-NOT transcription complex subunit 2 isoform X1.
    
 
 0.881
UBE2G2
Ubiquitin-conjugating enzyme E2 G2 isoform X5; Belongs to the ubiquitin-conjugating enzyme family.
    
 
 0.826
SQLE
Squalene monooxygenase.
    
 
 0.804
ZGPAT
Zinc finger CCCH-type with G patch domain-containing protein.
   
  
 0.797
UBE2J2
Ubiquitin-conjugating enzyme E2 J2.
    
 
 0.792
VCP
Transitional endoplasmic reticulum ATPase; Belongs to the AAA ATPase family.
    
 
 0.721
SPATA5
ATPase family protein 2 homolog isoform X1.
    
 
 0.721
SPATA5L1
Spermatogenesis-associated protein 5-like protein 1 isoform X1.
    
 
 0.721
DNAJC10
DnaJ homolog subfamily C member 10; Endoplasmic reticulum disulfide reductase involved both in the correct folding of proteins and degradation of misfolded proteins.
   
  
 0.705
SYVN1
E3 ubiquitin-protein ligase synoviolin.
    
 
 0.687
Your Current Organism:
Physeter catodon
NCBI taxonomy Id: 9755
Other names: P. catodon, Physeter macrocephalus, sperm whale
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