STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DMTF1cyclin-D-binding Myb-like transcription factor 1. (762 aa)    
Predicted Functional Partners:
TDRD3
Tudor domain-containing protein 3 isoform X1.
      
 0.640
ARID3B
AT-rich interactive domain-containing protein 3B isoform X3.
   
 
 0.607
ZNRD1
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.
    
 0.581
MED24
Mediator of RNA polymerase II transcription subunit 24 isoform X1.
      
 0.576
TWISTNB
DNA-directed RNA polymerase I subunit RPA43 isoform X1.
    
 0.573
POLR1C
DNA-directed RNA polymerases I and III subunit RPAC1 isoform X1.
    
 0.567
POLR1E
DNA-directed RNA polymerase I subunit RPA49.
    
 0.566
POLR1B
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.542
POLR1A
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 0.539
ATF6B
LOW QUALITY PROTEIN: cyclic AMP-dependent transcription factor ATF-6 beta.
      
 0.531
Your Current Organism:
Physeter catodon
NCBI taxonomy Id: 9755
Other names: P. catodon, Physeter macrocephalus, sperm whale
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