STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RTCBRNA-splicing ligase RtcB homolog; Catalytic subunit of the tRNA-splicing ligase complex that acts by directly joining spliced tRNA halves to mature-sized tRNAs by incorporating the precursor-derived splice junction phosphate into the mature tRNA as a canonical 3',5'-phosphodiester. May act as an RNA ligase with broad substrate specificity, and may function toward other RNAs. (505 aa)    
Predicted Functional Partners:
FAM98B
LOW QUALITY PROTEIN: protein FAM98B.
    
 0.964
C12H2orf49
Ashwin.
    
 0.963
DDX1
ATP-dependent RNA helicase DDX1 isoform X4.
   
 0.957
ZBTB8OS
Protein archease isoform X1.
  
 0.948
RTRAF
RNA transcription, translation and transport factor protein isoform X2.
   
 0.876
RTCA
RNA 3'-terminal phosphate cyclase isoform X1.
  
  
 0.820
ENSPCTP00005009189
annotation not available
   
 0.814
ENSPCTP00005009211
annotation not available
   
 0.814
ETF1
Eukaryotic peptide chain release factor subunit 1 isoform X1.
  
    0.739
RCL1
RNA 3'-terminal phosphate cyclase-like protein isoform X1.
  
  
 0.729
Your Current Organism:
Physeter catodon
NCBI taxonomy Id: 9755
Other names: P. catodon, Physeter macrocephalus, sperm whale
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.