STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TIMP4Metalloproteinase inhibitor 4. (224 aa)    
Predicted Functional Partners:
MMP9
Matrix metalloproteinase-9.
   
 0.792
MMP8
Neutrophil collagenase.
   
 0.766
MMP7
LOW QUALITY PROTEIN: matrilysin.
   
 0.688
MMP14
Matrix metalloproteinase-14.
   
 0.688
MMP3
Stromelysin-1.
   
 0.655
MMP13
Collagenase 3.
   
 0.653
MMP16
Matrix metalloproteinase-16.
   
 0.636
MMP2
72 kDa type IV collagenase.
   
 0.634
MMP24
Matrix metalloproteinase-24.
   
 0.615
MMP27
Matrix metalloproteinase-27.
   
 0.604
Your Current Organism:
Physeter catodon
NCBI taxonomy Id: 9755
Other names: P. catodon, Physeter macrocephalus, sperm whale
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.