TRAV3 protein (Physeter catodon) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

TRAV3

T cell receptor alpha variable 3 (gene/pseudogene). (124 aa)

Predicted Functional Partners:

TRAV10

0.783

STARD3NL

0.534

LOC102978676

0.508

ENSPCTP00005027157

0.506

ENSPCTP00005013590

0.486

ENSPCTP00005014219

0.470

ENSPCTP00005012206

0.462

ENSPCTP00005011318

0.460

DAD1

0.451

ENSPCTP00005012231

0.451

Your Current Organism:

Physeter catodon

NCBI taxonomy Id: 9755
Other names: P. catodon, Physeter macrocephalus, sperm whale

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DAD1	LOC102978676	ENSPCTP00005012006	ENSPCTP00005005945	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit DAD1; Subunit of the oligosaccharyl transferase (OST) complex that catalyzes the initial transfer of a defined glycan (Glc(3)Man(9)GlcNAc(2) in eukaryotes) from the lipid carrier dolichol- pyrophosphate to an asparagine residue within an Asn-X-Ser/Thr consensus motif in nascent polypeptide chains, the first step in protein N-glycosylation. N-glycosylation occurs cotranslationally and the complex associates with the Sec61 complex at the channel-forming translocon complex that mediates protein translocation across the [...]	TCR gamma alternate reading frame protein.	0.447
DAD1	STARD3NL	ENSPCTP00005012006	ENSPCTP00005005927	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit DAD1; Subunit of the oligosaccharyl transferase (OST) complex that catalyzes the initial transfer of a defined glycan (Glc(3)Man(9)GlcNAc(2) in eukaryotes) from the lipid carrier dolichol- pyrophosphate to an asparagine residue within an Asn-X-Ser/Thr consensus motif in nascent polypeptide chains, the first step in protein N-glycosylation. N-glycosylation occurs cotranslationally and the complex associates with the Sec61 complex at the channel-forming translocon complex that mediates protein translocation across the [...]	STARD3 N-terminal-like protein.	0.630
DAD1	TRAV10	ENSPCTP00005012006	ENSPCTP00005010403	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit DAD1; Subunit of the oligosaccharyl transferase (OST) complex that catalyzes the initial transfer of a defined glycan (Glc(3)Man(9)GlcNAc(2) in eukaryotes) from the lipid carrier dolichol- pyrophosphate to an asparagine residue within an Asn-X-Ser/Thr consensus motif in nascent polypeptide chains, the first step in protein N-glycosylation. N-glycosylation occurs cotranslationally and the complex associates with the Sec61 complex at the channel-forming translocon complex that mediates protein translocation across the [...]	T cell receptor alpha variable 10.	0.442
DAD1	TRAV3	ENSPCTP00005012006	ENSPCTP00005009888	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit DAD1; Subunit of the oligosaccharyl transferase (OST) complex that catalyzes the initial transfer of a defined glycan (Glc(3)Man(9)GlcNAc(2) in eukaryotes) from the lipid carrier dolichol- pyrophosphate to an asparagine residue within an Asn-X-Ser/Thr consensus motif in nascent polypeptide chains, the first step in protein N-glycosylation. N-glycosylation occurs cotranslationally and the complex associates with the Sec61 complex at the channel-forming translocon complex that mediates protein translocation across the [...]	T cell receptor alpha variable 3 (gene/pseudogene).	0.451
ENSPCTP00005011318	ENSPCTP00005013590	ENSPCTP00005011318	ENSPCTP00005013590	annotation not available	annotation not available	0.438
ENSPCTP00005011318	ENSPCTP00005014219	ENSPCTP00005011318	ENSPCTP00005014219	annotation not available	annotation not available	0.438
ENSPCTP00005011318	TRAV3	ENSPCTP00005011318	ENSPCTP00005009888	annotation not available	T cell receptor alpha variable 3 (gene/pseudogene).	0.460
ENSPCTP00005012206	ENSPCTP00005013590	ENSPCTP00005012206	ENSPCTP00005013590	annotation not available	annotation not available	0.613
ENSPCTP00005012206	ENSPCTP00005014219	ENSPCTP00005012206	ENSPCTP00005014219	annotation not available	annotation not available	0.498
ENSPCTP00005012206	ENSPCTP00005027157	ENSPCTP00005012206	ENSPCTP00005027157	annotation not available	annotation not available	0.535
ENSPCTP00005012206	TRAV3	ENSPCTP00005012206	ENSPCTP00005009888	annotation not available	T cell receptor alpha variable 3 (gene/pseudogene).	0.462
ENSPCTP00005012231	ENSPCTP00005013590	ENSPCTP00005012231	ENSPCTP00005013590	annotation not available	annotation not available	0.612
ENSPCTP00005012231	ENSPCTP00005014219	ENSPCTP00005012231	ENSPCTP00005014219	annotation not available	annotation not available	0.644
ENSPCTP00005012231	ENSPCTP00005027157	ENSPCTP00005012231	ENSPCTP00005027157	annotation not available	annotation not available	0.411
ENSPCTP00005012231	TRAV3	ENSPCTP00005012231	ENSPCTP00005009888	annotation not available	T cell receptor alpha variable 3 (gene/pseudogene).	0.451
ENSPCTP00005013590	ENSPCTP00005011318	ENSPCTP00005013590	ENSPCTP00005011318	annotation not available	annotation not available	0.438
ENSPCTP00005013590	ENSPCTP00005012206	ENSPCTP00005013590	ENSPCTP00005012206	annotation not available	annotation not available	0.613
ENSPCTP00005013590	ENSPCTP00005012231	ENSPCTP00005013590	ENSPCTP00005012231	annotation not available	annotation not available	0.612
ENSPCTP00005013590	ENSPCTP00005027157	ENSPCTP00005013590	ENSPCTP00005027157	annotation not available	annotation not available	0.883
ENSPCTP00005013590	LOC102978676	ENSPCTP00005013590	ENSPCTP00005005945	annotation not available	TCR gamma alternate reading frame protein.	0.438