STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TAPBPTapasin isoform X1. (497 aa)    
Predicted Functional Partners:
CALR
Calreticulin.
    
 0.999
PDIA3
Protein disulfide-isomerase.
   
 0.999
TAP1
Antigen peptide transporter 1.
   
 0.992
TAP2
Antigen peptide transporter 2.
   
 0.978
LOC112064291
BOLA class I histocompatibility antigen, alpha chain BL3-7-like isoform X2; Belongs to the MHC class I family.
   
 0.968
LOC102985933
H-2 class I histocompatibility antigen, Q10 alpha chain-like isoform X1; Belongs to the MHC class I family.
   
 0.968
LOC102976852
LOW QUALITY PROTEIN: calreticulin-like.
    
 0.962
CALR3
Calreticulin.
    
 0.865
CANX
Calnexin.
    
 0.840
PDIA4
Protein disulfide-isomerase.
   
 0.795
Your Current Organism:
Physeter catodon
NCBI taxonomy Id: 9755
Other names: P. catodon, Physeter macrocephalus, sperm whale
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.