STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSPCTP00005028712annotation not available (142 aa)    
Predicted Functional Partners:
CLASRP
CLK4-associating serine/arginine rich protein isoform X1.
      
 0.617
ENSPCTP00005013088
annotation not available
  
 0.597
ENSPCTP00005004767
annotation not available
  
 0.588
ENSPCTP00005025370
annotation not available
  
 0.568
BCL2L2-PABPN1
Polyadenylate-binding protein 2 isoform X3.
  
 0.560
ENSPCTP00005000646
annotation not available
  
 0.557
ENSPCTP00005021245
annotation not available
  
 0.549
GABPB2
GA-binding protein subunit beta-2 isoform X3.
    
 
 0.543
TSEN34
tRNA-splicing endonuclease subunit Sen34; Constitutes one of the two catalytic subunit of the tRNA- splicing endonuclease complex, a complex responsible for identification and cleavage of the splice sites in pre-tRNA. It cleaves pre-tRNA at the 5'- and 3'-splice sites to release the intron. The products are an intron and two tRNA half-molecules bearing 2',3'-cyclic phosphate and 5'-OH termini. There are no conserved sequences at the splice sites, but the intron is invariably located at the same site in the gene, placing the splice sites an invariant distance from the constant structura [...]
    
 
 0.538
ALYREF
THO complex subunit 4.
  
 0.535
Your Current Organism:
Physeter catodon
NCBI taxonomy Id: 9755
Other names: P. catodon, Physeter macrocephalus, sperm whale
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