STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMZ1Archaemetzincin-1 isoform X2. (488 aa)    
Predicted Functional Partners:
RAPGEFL1
Rap guanine nucleotide exchange factor-like 1 isoform X1.
      
 0.511
GAREM1
GRB2-associated and regulator of MAPK protein 1 isoform X1.
      
 0.508
SDR16C5
Epidermal retinol dehydrogenase 2 isoform X2; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
      
 0.506
CCDC71
Coiled-coil domain-containing protein 71.
      
 0.499
CDADC1
Cytidine and dCMP deaminase domain-containing protein 1 isoform X1.
      
 0.455
ZCCHC3
Zinc finger CCHC domain-containing protein 3.
      
 0.439
KIAA0391
Mitochondrial ribonuclease P catalytic subunit.
      
 0.436
SMTNL2
Smoothelin-like protein 2 isoform X1.
      
 0.431
EML1
Echinoderm microtubule-associated protein-like 1 isoform X5.
      
 0.404
SDK2
Protein sidekick-2.
      
 0.402
Your Current Organism:
Physeter catodon
NCBI taxonomy Id: 9755
Other names: P. catodon, Physeter macrocephalus, sperm whale
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.