FYB2 protein (Physeter catodon) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

FYB2

LOW QUALITY PROTEIN: FYN-binding protein 2. (389 aa)

Predicted Functional Partners:

DNAJC5B

0.536

ANO3

0.512

ROMO1

0.495

ENSPCTP00005013217

0.456

SON

0.445

EMP2

0.433

LOC112064845

0.414

ENSPCTP00005029529

0.414

ENSPCTP00005015239

0.407

Your Current Organism:

Physeter catodon

NCBI taxonomy Id: 9755
Other names: P. catodon, Physeter macrocephalus, sperm whale

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ANO3	FYB2	ENSPCTP00005015220	ENSPCTP00005032138	Anoctamin.	LOW QUALITY PROTEIN: FYN-binding protein 2.	0.512
DNAJC5B	FYB2	ENSPCTP00005007017	ENSPCTP00005032138	dnaJ homolog subfamily C member 5B isoform X1.	LOW QUALITY PROTEIN: FYN-binding protein 2.	0.536
EMP2	FYB2	ENSPCTP00005020467	ENSPCTP00005032138	Epithelial membrane protein 2; Functions as a key regulator of cell membrane composition by regulating proteins surface expression. Also, plays a role in regulation of processes including cell migration, cell proliferation, cell contraction and cell adhesion; Belongs to the PMP-22/EMP/MP20 family.	LOW QUALITY PROTEIN: FYN-binding protein 2.	0.433
ENSPCTP00005013217	FYB2	ENSPCTP00005013217	ENSPCTP00005032138	annotation not available	LOW QUALITY PROTEIN: FYN-binding protein 2.	0.456
ENSPCTP00005013217	SON	ENSPCTP00005013217	ENSPCTP00005004961	annotation not available	LOW QUALITY PROTEIN: protein SON.	0.484
ENSPCTP00005015239	FYB2	ENSPCTP00005015239	ENSPCTP00005032138	annotation not available	LOW QUALITY PROTEIN: FYN-binding protein 2.	0.407
ENSPCTP00005015239	SON	ENSPCTP00005015239	ENSPCTP00005004961	annotation not available	LOW QUALITY PROTEIN: protein SON.	0.421
ENSPCTP00005029529	FYB2	ENSPCTP00005029529	ENSPCTP00005032138	annotation not available	LOW QUALITY PROTEIN: FYN-binding protein 2.	0.414
FYB2	ANO3	ENSPCTP00005032138	ENSPCTP00005015220	LOW QUALITY PROTEIN: FYN-binding protein 2.	Anoctamin.	0.512
FYB2	DNAJC5B	ENSPCTP00005032138	ENSPCTP00005007017	LOW QUALITY PROTEIN: FYN-binding protein 2.	dnaJ homolog subfamily C member 5B isoform X1.	0.536
FYB2	EMP2	ENSPCTP00005032138	ENSPCTP00005020467	LOW QUALITY PROTEIN: FYN-binding protein 2.	Epithelial membrane protein 2; Functions as a key regulator of cell membrane composition by regulating proteins surface expression. Also, plays a role in regulation of processes including cell migration, cell proliferation, cell contraction and cell adhesion; Belongs to the PMP-22/EMP/MP20 family.	0.433
FYB2	ENSPCTP00005013217	ENSPCTP00005032138	ENSPCTP00005013217	LOW QUALITY PROTEIN: FYN-binding protein 2.	annotation not available	0.456
FYB2	ENSPCTP00005015239	ENSPCTP00005032138	ENSPCTP00005015239	LOW QUALITY PROTEIN: FYN-binding protein 2.	annotation not available	0.407
FYB2	ENSPCTP00005029529	ENSPCTP00005032138	ENSPCTP00005029529	LOW QUALITY PROTEIN: FYN-binding protein 2.	annotation not available	0.414
FYB2	LOC112064845	ENSPCTP00005032138	ENSPCTP00005013026	LOW QUALITY PROTEIN: FYN-binding protein 2.	LOW QUALITY PROTEIN: paired immunoglobulin-like type 2 receptor alpha.	0.414
FYB2	ROMO1	ENSPCTP00005032138	ENSPCTP00005010203	LOW QUALITY PROTEIN: FYN-binding protein 2.	Reactive oxygen species modulator 1.	0.495
FYB2	SON	ENSPCTP00005032138	ENSPCTP00005004961	LOW QUALITY PROTEIN: FYN-binding protein 2.	LOW QUALITY PROTEIN: protein SON.	0.445
LOC112064845	FYB2	ENSPCTP00005013026	ENSPCTP00005032138	LOW QUALITY PROTEIN: paired immunoglobulin-like type 2 receptor alpha.	LOW QUALITY PROTEIN: FYN-binding protein 2.	0.414
LOC112064845	SON	ENSPCTP00005013026	ENSPCTP00005004961	LOW QUALITY PROTEIN: paired immunoglobulin-like type 2 receptor alpha.	LOW QUALITY PROTEIN: protein SON.	0.449
ROMO1	FYB2	ENSPCTP00005010203	ENSPCTP00005032138	Reactive oxygen species modulator 1.	LOW QUALITY PROTEIN: FYN-binding protein 2.	0.495