STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SHROOM1Shroom family member 1. (841 aa)    
Predicted Functional Partners:
TEX15
Testis expressed 15, meiosis and synapsis associated.
      
 0.682
VSIG10L
Uncharacterized protein.
      
 0.660
FAAP24
FA core complex associated protein 24.
      
 0.628
ITGAL
Integrin subunit alpha L; Belongs to the integrin alpha chain family.
      
 0.603
SOWAHA
Sosondowah ankyrin repeat domain family member A.
      
 0.574
TDRD6
Tudor domain containing 6.
      
 0.571
RTL9
Retrotransposon Gag like 9.
  
     0.499
GRXCR2
Glutaredoxin and cysteine rich domain containing 2.
      
 0.493
GRXCR1
Glutaredoxin and cysteine rich domain containing 1.
      
 0.493
DLEC1
Uncharacterized protein.
      
 0.491
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.