STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMARCAD1Uncharacterized protein. (1024 aa)    
Predicted Functional Partners:
TRIM28
Tripartite motif containing 28.
   
 
 0.939
EXO1
Exonuclease 1.
    
 
 0.760
MSH2
DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR).
   
 
 0.739
TRIM33
Tripartite motif containing 33.
   
 
 0.707
DNA2
DNA replication helicase/nuclease 2.
    
 
 0.691
TRIM24
Tripartite motif containing 24.
   
 
 0.605
WRN
WRN RecQ like helicase.
   
 
 0.589
TTF2
Helicase ATP-binding domain-containing protein.
  
   0.562
TP53BP1
Tumor protein p53 binding protein 1.
   
 
 0.535
BLM
Uncharacterized protein.
   
 
 0.527
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.