Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SMARCAD1Uncharacterized protein. (1024 aa)    
Predicted Functional Partners:
TRIM28
Tripartite motif containing 28.
   
 
 0.970
MSH2
DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR).
   
 
 0.950
EXO1
Exonuclease 1.
    
 
 0.840
TRIM33
Tripartite motif containing 33.
   
 
 0.788
MSH6
DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR).
   
 
 0.686
GTF3C3
General transcription factor IIIC subunit 3.
   
 
 0.665
TP53BP1
Tumor protein p53 binding protein 1.
   
 
 0.664
SMC3
Structural maintenance of chromosomes protein.
   
 
 0.662
SMC1A
Structural maintenance of chromosomes protein.
   
 
 0.661
TRIM24
Tripartite motif containing 24.
   
 
 0.655
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
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