STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CDKAL1CDK5 regulatory subunit associated protein 1 like 1. (574 aa)    
Predicted Functional Partners:
EXOSC3
Exosome component 3.
    
 
 0.733
AIFM2
Apoptosis inducing factor mitochondria associated 2.
      
 0.700
TMLHE
Trimethyllysine hydroxylase, epsilon.
      
 0.662
UROD
Uroporphyrinogen decarboxylase; Belongs to the uroporphyrinogen decarboxylase family.
   
 
 0.653
ENDOV
Endonuclease V.
   
 
 0.653
TRMU
tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase.
  
  
 0.613
MMS19
MMS19 homolog, cytosolic iron-sulfur assembly component.
   
 
 0.611
TRIT1
tRNA dimethylallyltransferase; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37; Belongs to the IPP transferase family.
  
  
 0.600
SLC30A8
Solute carrier family 30 member 8.
      
 0.582
MRPS9
Mitochondrial ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.
  
  
 0.580
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
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