STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
UPF3BUPF3B regulator of nonsense mediated mRNA decay. (470 aa)    
Predicted Functional Partners:
UPF1
UPF1 RNA helicase and ATPase.
    
 0.988
G3UN69_LOXAF
Uncharacterized protein.
   
 0.980
SMG6
SMG6 nonsense mediated mRNA decay factor.
   
 0.972
EIF4A3
Eukaryotic translation initiation factor 4A3; Belongs to the DEAD box helicase family.
   
 0.958
SMG5
SMG5 nonsense mediated mRNA decay factor.
   
 0.956
RNPS1
RNA binding protein with serine rich domain 1.
   
 0.945
MAGOHB
Mago homolog B, exon junction complex subunit.
    
 0.939
ALYREF
Aly/REF export factor.
    
 0.933
CASC3
CASC3 exon junction complex subunit.
    
 0.925
SRRM1
Serine and arginine repetitive matrix 1.
    
 0.915
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.