STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
UPF3BUPF3B regulator of nonsense mediated mRNA decay. (470 aa)    
Predicted Functional Partners:
MAGOHB
Mago homolog B, exon junction complex subunit.
    
 0.985
UPF1
UPF1 RNA helicase and ATPase.
    
 0.984
G3UN69_LOXAF
Uncharacterized protein.
   
 0.957
RANBP2
RAN binding protein 2.
   
 
 0.949
EIF4A3
Eukaryotic translation initiation factor 4A3; Belongs to the DEAD box helicase family.
   
 0.947
G3SLM1_LOXAF
Uncharacterized protein.
    
 0.936
NXF1
Nuclear RNA export factor 1.
    
 0.936
G3TWC5_LOXAF
Uncharacterized protein.
    
 0.936
SMG5
SMG5 nonsense mediated mRNA decay factor.
   
 0.918
CASC3
CASC3 exon junction complex subunit.
    
 0.914
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.