Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SDK1Sidekick cell adhesion molecule 1. (2118 aa)    
Predicted Functional Partners:
ZSCAN25
Zinc finger and SCAN domain containing 25.
     
 0.781
HINFP
Histone H4 transcription factor.
      
 0.632
G3SM54_LOXAF
Rieske domain-containing protein.
      
 0.624
DKKL1
Dickkopf like acrosomal protein 1.
   
 
 0.595
SLC35F1
Solute carrier family 35 member F1.
      
 0.566
CORO2B
Coronin; Belongs to the WD repeat coronin family.
   
  
 0.558
CORO2A
Coronin; Belongs to the WD repeat coronin family.
   
  
 0.558
BICC1
BicC family RNA binding protein 1.
      
 0.546
FOXK1
Forkhead box K1.
    
 
 0.532
EFCAB14
EF-hand calcium binding domain 14.
      
 0.513
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
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