Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SCCPDHSaccharopine dehydrogenase (putative). (429 aa)    
Predicted Functional Partners:
TMX3
Thioredoxin related transmembrane protein 3.
      
 0.641
TMX4
Thioredoxin related transmembrane protein 4.
   
  
 0.582
TCERG1L
Transcription elongation regulator 1 like.
   
  
 0.563
CNST
Consortin, connexin sorting protein.
 
      0.521
TMEM88B
Transmembrane protein 88B.
      
 0.501
OLA1
Obg-like ATPase 1; Hydrolyzes ATP, and can also hydrolyze GTP with lower efficiency. Has lower affinity for GTP.
     
  0.496
GTPBP2
GTP binding protein 2.
     
  0.496
SPARC
Secreted protein acidic and cysteine rich.
     
  0.495
AASS
Aminoadipate-semialdehyde synthase.
     
  0.486
STOML1
Stomatin like 1.
   
  
 0.485
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
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