STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VTI1BVesicle transport through interaction with t-SNAREs 1B. (232 aa)    
Predicted Functional Partners:
STX8
Syntaxin 8.
   
 0.993
YKT6
YKT6 v-SNARE homolog; Belongs to the synaptobrevin family.
    
 0.992
STX16-NPEPL1
t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.
   
 0.989
STX7
Syntaxin 7; Belongs to the syntaxin family.
   
 0.977
VAMP8
Vesicle associated membrane protein 8.
   
 0.958
VTI1A
Vesicle transport through interaction with t-SNAREs 1A.
    
0.957
CLINT1
Clathrin interactor 1.
    
 
 0.954
STX5
Syntaxin 5; Belongs to the syntaxin family.
    
 
 0.932
VPS18
VPS18 core subunit of CORVET and HOPS complexes.
    
 
 0.887
VPS41
Vacuolar protein sorting-associated protein 41 homolog; Plays a role in vesicle-mediated protein trafficking to lysosomal compartments including the endocytic membrane transport pathways; Belongs to the VPS41 family.
    
 
 0.887
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
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