STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
VTI1BVesicle transport through interaction with t-SNAREs 1B. (232 aa)    
Predicted Functional Partners:
STX8
Syntaxin 8.
   
 0.999
STX7
Syntaxin 7; Belongs to the syntaxin family.
   
 0.998
VAMP4
Vesicle associated membrane protein 4.
   
 0.997
VTI1A
Vesicle transport through interaction with t-SNAREs 1A.
   
0.992
STX12
Syntaxin 12; Belongs to the syntaxin family.
   
 0.989
STX16-NPEPL1
t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.
   
 0.989
STX6
Syntaxin 6; Belongs to the syntaxin family.
   
 0.988
STX10
Syntaxin 10; Belongs to the syntaxin family.
   
 0.982
YKT6
YKT6 v-SNARE homolog; Belongs to the synaptobrevin family.
    
 0.975
NAPG
NSF attachment protein gamma.
   
 0.955
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.