STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
MMP26Matrix metallopeptidase 26. (263 aa)    
Predicted Functional Partners:
MMP9
Matrix metallopeptidase 9.
   
 0.691
TIMP3
TIMP metallopeptidase inhibitor 3.
   
 0.682
MMP1
Matrix metallopeptidase 1.
   
 0.677
TIMP2
TIMP metallopeptidase inhibitor 2.
   
 0.672
MMP14
Matrix metallopeptidase 14.
   
 0.650
MMP13
Matrix metallopeptidase 13.
   
 0.637
NFKB1
Nuclear factor kappa B subunit 1.
   
 0.607
VEGFA
PDGF_2 domain-containing protein; Belongs to the PDGF/VEGF growth factor family.
     
 0.595
THBS1
Thrombospondin 1.
   
 0.592
RELA
RELA proto-oncogene, NF-kB subunit.
    
 0.577
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.