STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CAPN8Calpain 8; Belongs to the peptidase C2 family. (603 aa)    
Predicted Functional Partners:
CAST
Calpastatin.
   
 0.799
CD5L
CD5 molecule like.
   
  
 0.742
KIRREL1
Kirre like nephrin family adhesion molecule 1.
      
 0.700
CAPNS1
Calpain small subunit 1.
   
 0.696
CAPNS2
Calpain small subunit 2.
   
 0.696
BID
BH3-interacting domain death agonist; Counters the protective effect of Bcl-2.
    
 0.681
BAX
BCL2 associated X, apoptosis regulator.
   
 0.671
BAK1
BCL2 antagonist/killer 1.
   
 0.670
IL1A
Interleukin-1; Belongs to the IL-1 family.
   
 
 0.665
FCRL3
Fc receptor like 3.
      
 0.580
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.