Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CSMD3CUB and Sushi multiple domains 3. (3420 aa)    
Predicted Functional Partners:
G3UJI9_LOXAF
Uncharacterized protein.
    
 0.784
TSSC4
Tumor suppressing subtransferable candidate 4.
      
 0.732
HYDIN
HYDIN axonemal central pair apparatus protein.
    
 0.599
TRPS1
Transcriptional repressor GATA binding 1.
    
 0.594
ZHX2
Zinc fingers and homeoboxes 2.
     
 0.579
DPH6
Diphthine--ammonia ligase; Amidase that catalyzes the last step of diphthamide biosynthesis using ammonium and ATP.
      
 0.575
PPP1R1C
Protein phosphatase 1 regulatory inhibitor subunit 1C.
      
 0.566
PKHD1L1
PKHD1 like 1.
      
 0.523
CCDC73
Coiled-coil domain containing 73.
      
 0.515
DOCK1
Dedicator of cytokinesis 1; Belongs to the DOCK family.
   
  
 0.509
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
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