STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEC22ASEC22 homolog A, vesicle trafficking protein; Belongs to the synaptobrevin family. (307 aa)    
Predicted Functional Partners:
BET1
Bet1 golgi vesicular membrane trafficking protein.
   
 0.932
STX5
Syntaxin 5; Belongs to the syntaxin family.
   
 0.920
GOSR2
Uncharacterized protein; Involved in transport of proteins from the cis/medial-Golgi to the trans-Golgi network.
    
 0.914
YKT6
YKT6 v-SNARE homolog; Belongs to the synaptobrevin family.
    
 0.894
SCFD1
Sec1 family domain containing 1; Belongs to the STXBP/unc-18/SEC1 family.
   
 0.868
STX18
Syntaxin 18.
   
 0.858
USE1
Unconventional SNARE in the ER 1.
    
 0.821
RINT1
RAD50 interactor 1.
    
 0.819
ZW10
Zw10 kinetochore protein.
    
 0.808
VTI1A
Vesicle transport through interaction with t-SNAREs 1A.
   
 
 0.803
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
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