STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RTCARNA 3'-terminal phosphate cyclase. (366 aa)    
Predicted Functional Partners:
PWP2
WD_REPEATS_REGION domain-containing protein.
   
 
 0.903
BMS1
BMS1 ribosome biogenesis factor.
   
 0.902
IMP4
IMP U3 small nucleolar ribonucleoprotein 4.
   
 
 0.895
UTP18
UTP18 small subunit processome component.
   
 0.884
WDR43
WD repeat domain 43.
   
 0.869
UTP4
UTP4 small subunit processome component.
   
 0.868
NOL6
Nucleolar protein 6.
   
 0.858
RTCB
RNA-splicing ligase RtcB homolog; Catalytic subunit of the tRNA-splicing ligase complex that acts by directly joining spliced tRNA halves to mature-sized tRNAs by incorporating the precursor-derived splice junction phosphate into the mature tRNA as a canonical 3',5'-phosphodiester. May act as an RNA ligase with broad substrate specificity, and may function toward other RNAs.
  
  
 0.854
BYSL
Bystin like.
   
 
 0.853
IMP3
IMP U3 small nucleolar ribonucleoprotein 3.
   
 0.848
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.