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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RTCARNA 3'-terminal phosphate cyclase. (366 aa)    
Predicted Functional Partners:
UTP18
UTP18 small subunit processome component.
   
 0.945
PWP2
WD_REPEATS_REGION domain-containing protein.
   
 
 0.939
IMP4
IMP U3 small nucleolar ribonucleoprotein 4.
   
 
 0.927
UTP4
UTP4 small subunit processome component.
   
 0.925
BMS1
BMS1 ribosome biogenesis factor.
   
 0.924
WDR43
WD repeat domain 43.
   
 0.921
UTP15
UTP15 small subunit processome component.
   
 0.919
UTP6
UTP6 small subunit processome component.
   
 
 0.912
NOL6
Nucleolar protein 6.
   
 0.912
WDR3
WD repeat domain 3.
   
 
 0.911
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
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