STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
JMJD1CJumonji domain containing 1C. (2360 aa)    
Predicted Functional Partners:
KDM4B
Lysine demethylase 4B.
     
 0.747
NIPBL
Nipped-B protein.
   
  
 0.647
KDM4A
Uncharacterized protein.
     
 0.640
KDM4C
Lysine demethylase 4C.
     
 0.639
REEP3
Receptor expression-enhancing protein.
      
 0.635
KDM7A
Lysine demethylase 7A.
   
 
 0.624
THAP3
THAP domain containing 3.
      
 0.574
RHOBTB3
Rho related BTB domain containing 3.
      
 0.569
SMARCB1
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1.
    
 0.564
KDM5B
Lysine demethylase 5B.
   
 
 0.554
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.