STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PRDM4PR domain zinc finger protein 4; May function as a transcription factor involved in cell differentiation. (788 aa)    
Predicted Functional Partners:
NGFR
Nerve growth factor receptor.
    
 0.872
RBFOX3
RNA binding protein fox-1 homolog 3; RNA-binding protein that regulates alternative splicing events.
    
 
 0.752
G3U7Y9_LOXAF
Death domain-containing protein.
    
  0.727
POLR3B
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 0.724
TMEM263
Transmembrane protein 263.
      
 0.700
VIPAS39
VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog.
      
 0.695
TTC28
Tetratricopeptide repeat domain 28.
   
 0.607
G3SUK2_LOXAF
Uncharacterized protein.
    
 0.596
CEP290
Centrosomal protein 290.
    
 0.595
FBXO7
F-box protein 7.
   
 0.587
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
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