STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ZC3H4Zinc finger CCCH-type containing 4. (1307 aa)    
Predicted Functional Partners:
WDR82
WD repeat domain 82.
   
 0.988
ZC3H6
Zinc finger CCCH-type containing 6.
    
 
 0.808
SYMPK
Symplekin.
   
 0.740
CPSF1
Cleavage and polyadenylation specific factor 1.
   
 0.740
CPSF2
Cleavage and polyadenylation specificity factor subunit 2.
   
 0.733
CPSF3
Cleavage and polyadenylation specific factor 3.
   
 0.731
RBBP6
RB binding protein 6, ubiquitin ligase.
   
 0.730
FIP1L1
Factor interacting with PAPOLA and CPSF1.
    
 0.719
CSTF3
Cleavage stimulation factor subunit 3.
    
 0.718
CSTF1
Cleavage stimulation factor subunit 1.
   
 0.715
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.