STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
OBI1ORC ubiquitin ligase 1. (725 aa)    
Predicted Functional Partners:
CNOT11
CCR4-NOT transcription complex subunit 11.
    
 
 0.836
CNOT10
CCR4-NOT transcription complex subunit 10.
    
 
 0.813
CCNA1
Cyclin A1; Belongs to the cyclin family.
     
  0.797
CDK1
Cyclin dependent kinase 1; Belongs to the protein kinase superfamily.
     
  0.797
WRAP73
WD repeat containing, antisense to TP73.
    
   0.781
CNOT1
CCR4-NOT transcription complex subunit 1.
    
 
 0.779
CNOT3
CCR4-NOT transcription complex subunit 3.
    
 
 0.712
TCEANC
Transcription elongation factor A N-terminal and central domain containing.
    
   0.707
CNOT6L
CCR4-NOT transcription complex subunit 6 like.
    
 
 0.702
RC3H1
Ring finger and CCCH-type domains 1.
    
 
 0.690
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.