STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
NBR1NBR1 autophagy cargo receptor. (983 aa)    
Predicted Functional Partners:
SQSTM1
Sequestosome 1.
    
 0.995
TAX1BP1
Tax1 binding protein 1.
   
 0.989
GABARAPL2
GABA type A receptor associated protein like 2.
   
 0.979
UBA52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
    
 0.972
CALCOCO2
Calcium binding and coiled-coil domain 2.
   
 0.961
RPS27A
Ubiquitin-like domain-containing protein.
   
 0.954
G3U9C8_LOXAF
Ubiquitin-like domain-containing protein.
   
 0.954
GABARAPL1
GABA type A receptor associated protein like 1.
   
 0.953
G3TFZ3_LOXAF
Uncharacterized protein.
   
 0.952
MAP1LC3B
Uncharacterized protein.
   
 0.952
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.