STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PRPF40APre-mRNA processing factor 40 homolog A. (957 aa)    
Predicted Functional Partners:
RBM25
PWI domain-containing protein.
   
 0.851
G3UCI8_LOXAF
Uncharacterized protein.
   
 0.851
CCAR1
Cell division cycle and apoptosis regulator 1.
   
 0.803
SF1
Splicing factor 1.
   
 0.794
U2SURP
U2 snRNP associated SURP domain containing.
   
 
 0.750
HTT
Huntingtin.
   
 0.743
TPR
Translocated promoter region, nuclear basket protein.
   
  0.732
XRN2
5'-3' exoribonuclease; Possesses 5'->3' exoribonuclease activity. May promote termination of transcription by RNA polymerase II.
   
  
 0.708
CDK5RAP1
CDK5 regulatory subunit associated protein 1.
 
 
   0.688
DDX5
DEAD-box helicase 5; Belongs to the DEAD box helicase family.
   
 0.682
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.