STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PRPF40APre-mRNA processing factor 40 homolog A. (957 aa)    
Predicted Functional Partners:
RBM25
PWI domain-containing protein.
   
 0.973
G3UCI8_LOXAF
Uncharacterized protein.
   
 0.973
U2SURP
U2 snRNP associated SURP domain containing.
   
 
 0.942
PRPF40B
Pre-mRNA processing factor 40 homolog B.
  
 
 
0.940
RBM23
RNA binding motif protein 23.
   
 0.930
RBM39
RNA binding motif protein 39.
   
 0.930
SF3A1
Uncharacterized protein.
   
 0.928
G3TTS0_LOXAF
Uncharacterized protein.
   
 0.928
SF1
Splicing factor 1.
   
 0.926
SRRT
Serrate, RNA effector molecule.
   
 0.926
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.