STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
TMEM117Transmembrane protein 117. (514 aa)    
Predicted Functional Partners:
TMEM106C
Transmembrane protein 106C.
   
  
 0.660
ZCRB1
Zinc finger CCHC-type and RNA binding motif containing 1.
      
 0.646
ANO6
Anoctamin.
      
 0.609
SCAF11
RING-type domain-containing protein.
      
 0.598
SLC2A13
Solute carrier family 2 member 13; Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family.
      
 0.590
KBTBD12
Kelch repeat and BTB domain containing 12.
      
 0.590
TMEM161B
Transmembrane protein 161B.
      
 0.571
CWC22
CWC22 spliceosome associated protein homolog.
      
 0.566
ARID2
AT-rich interaction domain 2.
      
 0.559
DBX2
Developing brain homeobox 2.
      
 0.554
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
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