STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
KCTD3Potassium channel tetramerization domain containing 3. (792 aa)    
Predicted Functional Partners:
SHKBP1
SH3KBP1 binding protein 1.
    
  0.933
LRRC40
Leucine rich repeat containing 40.
    
  0.804
CUL3
Cullin 3; Belongs to the cullin family.
    
 0.803
NUDCD1
NudC domain containing 1.
    
   0.764
MRI1
Methylthioribose-1-phosphate isomerase 1; Belongs to the eIF-2B alpha/beta/delta subunits family.
    
   0.760
GPATCH2
G-patch domain containing 2.
      
 0.735
KCTD7
Potassium channel tetramerization domain containing 7.
    
 
 0.704
SPATA17
Spermatogenesis associated 17.
      
 0.672
PIH1D1
PIH1 domain containing 1.
    
   0.664
G3TBM5_LOXAF
WD_REPEATS_REGION domain-containing protein.
     
 0.650
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
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