STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
USH2AUncharacterized protein. (1213 aa)    
Predicted Functional Partners:
G3U823_LOXAF
Uncharacterized protein.
 
     0.919
LAMB1
Laminin subunit beta 1.
   
0.724
LAMC3
Laminin subunit gamma 3.
   
0.649
LAMC1
Laminin subunit gamma 1.
   
0.649
LAMC2
Laminin subunit gamma 2.
   
0.649
COCH
Cochlin.
    
 0.633
KIF1B
Kinesin family member 1B; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.
    
 
 0.630
USH1C
USH1 protein network component harmonin.
    
 
 0.619
HIVEP3
Human immunodeficiency virus type I enhancer binding protein 3.
   
 0.528
ARID4B
AT-rich interaction domain 4B.
    
 
 0.522
Your Current Organism:
Loxodonta africana
NCBI taxonomy Id: 9785
Other names: African bush elephant, African savanna elephant, African savannah elephant, L. africana, Loxodonta africana africana, elephant
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.